FALCON is a compression-based method to infer metagenomic sample composition

It answers: Site | Paper | Program

SMASH

SMASH: an alignment-free method to find and visualise rearrangements between pairs of DNA sequences.
The method is based on the relative information contained in across the sequences.

It answers: Site | Paper | Program
EAGLE: alignment-free method to find relative absent words (RAWs) in genomic sequences using a reference sequence.

It answers: Site | Paper | Program

CHESTER

CHESTER: an alignment-free method to find and visualize relative singularity regions.

It answers: Site | Paper | Program
GeCo: an efficient compressor for genomic sequences.

It answers: Site | Paper | Program

GULL

GULL: a tool for measuring relative similarity between non-assembled genomic sequences without supervision.
It answers: Site | Paper | Program
GOOSE: a framework for DNA sequence manipulation and analysis.
It answers: Site | Paper | Program